Transcript: HCP5:11

Basic information

LNCipedia transcript ID: HCP5:11 
LNCipedia gene ID: HCP5
Location (hg38): chr6:31463185-31478744
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1951 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000206337.6|FTMT22300019190.1
Alternative gene names: D6S2650E; P5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -8.6003 non-coding 
CPAT coding probability 19.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCP5:11 no no no no

Available literature

  1. Jiang (2015), LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data., BMC Genomics
  2. Kulski (1999), The P5 multicopy gene family in the MHC is related in sequence to human endogenous retroviruses HERV-L and HERV-16., Immunogenetics
  3. Vernet (1993), A novel coding sequence belonging to a new multicopy gene family mapping within the human MHC class I region., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HCP5:11
5.0 HCP5:11
5.1 HCP5:11
5.2 HCP5:11