Transcript: HCP5:6

Basic information

LNCipedia transcript ID: HCP5:6 
HGNC Gene Symbol: HCP5    
HGNC Full Gene Name: HLA complex P5
Ensembl Gene ID: ENSG00000206337
Ensembl Transcript ID: ENST00000467369
Location (hg38): chr6:31463185-31477506
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000467369.1; HCP5-004; OTTHUMT00000356317.1; NONHSAT108774
Alternative gene names: ENSG00000206337.6; HCP5; OTTHUMG00000031282.4; ENSG00000206337.10; D6S2650E; P5-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.0283 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCP5:6 no no no no

Available literature

  1. Jiang (2015), LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data., BMC Genomics
  2. Kulski (1999), The P5 multicopy gene family in the MHC is related in sequence to human endogenous retroviruses HERV-L and HERV-16., Immunogenetics
  3. Vernet (1993), A novel coding sequence belonging to a new multicopy gene family mapping within the human MHC class I region., Immunogenetics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MICB-3:2
4.0 HCP5:6
4.1 HCP5:6
5.0 HCP5:6
5.1 HCP5:6
5.2 HCP5:6