Transcript: HDAC2-AS2:121

Basic information

LNCipedia transcript ID: HDAC2-AS2:121 
LNCipedia gene ID: HDAC2-AS2
Location (hg38): chr6:114415580-114454079
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 263 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011932; NONHSAT114611
Alternative gene names: XLOC_005441; linc-NT5DC1-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.2401 non-coding 
CPAT coding probability 8.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDAC2-AS2:121 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MARCKS-3:16
3.1 lnc-MARCKS-5:16
4.0 lnc-MARCKS-5:16
4.1 lnc-MARCKS-5:16
5.0 lnc-MARCKS-5:16
5.1 HDAC2-AS2:59
5.2 HDAC2-AS2:121