Transcript: HDAC2-AS2:65

Basic information

LNCipedia transcript ID: HDAC2-AS2:65 
LNCipedia gene ID: HDAC2-AS2
RefSeq ID: NR_125845
Location (hg38): chr6:113969701-114340729
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2007 bp
Exons: 10
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125845; NR_125845.1
Alternative gene names: LOC101927768


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -127.4547 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDAC2-AS2:65 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MARCKS-5:27
4.0 lnc-MARCKS-5:27
4.1 lnc-MARCKS-5:27
5.0 lnc-MARCKS-5:27
5.1 HDAC2-AS2:3
5.2 HDAC2-AS2:65