Transcript: HDAC2-AS2:66

Basic information

LNCipedia transcript ID: HDAC2-AS2:66 
HGNC Gene Symbol: HDAC2-AS2    
HGNC Full Gene Name: HDAC2 and HS3ST5 antisense RNA 2
Ensembl Gene ID: ENSG00000228624
Ensembl Transcript ID: ENST00000520554
Location (hg38): chr6:113969954-113993463
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 568 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520554; ENST00000520554.1; RP3-399L15.3-013; OTTHUMT00000379842.1; NONHSAT114585; ENST00000520554.5
Alternative gene names: ENSG00000228624; RP3-399L15.3; ENSG00000228624.2; OTTHUMG00000164691.2; ENSG00000228624.3; ENSG00000228624.7; HDAC2-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.3511 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDAC2-AS2:66 yes no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MARCKS-3:2
3.1 lnc-MARCKS-5:2
4.0 lnc-MARCKS-5:2
4.1 lnc-MARCKS-5:2
5.0 lnc-MARCKS-5:2
5.1 HDAC2-AS2:4
5.2 HDAC2-AS2:66