Transcript: HDAC2-AS2:76

Basic information

LNCipedia transcript ID: HDAC2-AS2:76 
HGNC Gene Symbol: HDAC2-AS2    
HGNC Full Gene Name: HDAC2 and HS3ST5 antisense RNA 2
Ensembl Gene ID: ENSG00000228624
Ensembl Transcript ID: ENST00000436876
Location (hg38): chr6:113970106-113995644
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 591 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436876; ENST00000436876.2; RP3-399L15.3-014; OTTHUMT00000379843.1; NONHSAT114588; ENST00000436876.6
Alternative gene names: ENSG00000228624; RP3-399L15.3; ENSG00000228624.2; OTTHUMG00000164691.2; ENSG00000228624.3; ENSG00000228624.7; HDAC2-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.3511 non-coding 
CPAT coding probability 1.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDAC2-AS2:76 yes no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MARCKS-3:3
3.1 lnc-MARCKS-5:3
4.0 lnc-MARCKS-5:3
4.1 lnc-MARCKS-5:3
5.0 lnc-MARCKS-5:3
5.1 HDAC2-AS2:14
5.2 HDAC2-AS2:76