Transcript: HDAC2-AS2:80

Basic information

LNCipedia transcript ID: HDAC2-AS2:80 
LNCipedia gene ID: HDAC2-AS2
Location (hg38): chr6:113970123-113995887
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 711 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228624.3|FTMT22300003331.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -192.3511 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDAC2-AS2:80 yes no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MARCKS-5:38
5.0 lnc-MARCKS-5:38
5.1 HDAC2-AS2:18
5.2 HDAC2-AS2:80