Transcript: HDHD5-AS1:22

Basic information

LNCipedia transcript ID: HDHD5-AS1:22 
LNCipedia gene ID: HDHD5-AS1
RefSeq ID: NR_024483
Location (hg38): chr22:17159389-17165445
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 626 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT083198; NR_024483; NR_024483.1
Alternative gene names: NCRNA00017; CECR5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.3111 non-coding 
CPAT coding probability 28.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HDHD5-AS1:22 no no no no

Available literature

  1. Footz (2001), Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC006946.15.1-1:5
4.0 CECR5-AS1:4
4.1 CECR5-AS1:4
5.0 CECR5-AS1:4
5.1 HDHD5-AS1:11
5.2 HDHD5-AS1:22