Transcript: HHATL-AS1:1

Basic information

LNCipedia transcript ID: HHATL-AS1:1 
HGNC Gene Symbol: HHATL-AS1    
HGNC Full Gene Name: HHATL antisense RNA 1
Ensembl Gene ID: ENSG00000230970
Ensembl Transcript ID: ENST00000423165
Location (hg38): chr3:42702653-42704628
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 557 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423165.1; HHATL-AS1-001; OTTHUMT00000343626.1; NONHSAT089257
Alternative gene names: ENSG00000230970.1; HHATL-AS1; OTTHUMG00000156258.1; ENSG00000230970.2; ENSG00000230970.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.3361 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HHATL-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KBTBD5-1:1
4.0 HHATL-AS1:1
4.1 HHATL-AS1:1
5.0 HHATL-AS1:1
5.1 HHATL-AS1:1
5.2 HHATL-AS1:1