Transcript: HHIP-AS1:1

Basic information

LNCipedia transcript ID: HHIP-AS1:1 
HGNC Gene Symbol: HHIP-AS1    
HGNC Full Gene Name: HHIP antisense RNA 1
Ensembl Gene ID: ENSG00000248890
Ensembl Transcript ID: ENST00000512359
Location (hg38): chr4:144643372-144661357
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 646 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512359; ENST00000512359.1; RP11-291L15.2-001; OTTHUMT00000364893.1; NONHSAT098601
Alternative gene names: ENSG00000248890; RP11-291L15.2; ENSG00000248890.1; OTTHUMG00000161429.1; HHIP-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 167.9968 coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HHIP-AS1:1 no no no no

Available literature

  1. Dong (2014), Comparison of long noncoding RNA and mRNA expression profiles in mesenchymal stem cells derived from human periodontal ligament and bone marrow., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANAPC10-1:1
3.1 lnc-ANAPC10-1:1
4.0 HHIP-AS1:1
4.1 HHIP-AS1:1
5.0 HHIP-AS1:1
5.1 HHIP-AS1:1
5.2 HHIP-AS1:1