Transcript: HIF1A-AS2:6

Basic information

LNCipedia transcript ID: HIF1A-AS2:6 
LNCipedia gene ID: HIF1A-AS2
Location (hg38): chr14:61716824-61751059
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 369 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT037277
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -356.5861 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HIF1A-AS2:6 yes no no no

Available literature

  1. Chen (2016), Tetracycline-inducible shRNA targeting antisense long non-coding RNA HIF1A-AS2 represses the malignant phenotypes of bladder cancer., Cancer Lett.
  2. Chen (2015), Antisense Long Noncoding RNA HIF1A-AS2 Is Upregulated in Gastric Cancer and Associated with Poor Prognosis., Dig. Dis. Sci.
  3. Bertozzi (2011), Characterization of novel antisense HIF-1α transcripts in human cancers., Cell Cycle


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM30B-5:2
4.0 lnc-TMEM30B-5:2
4.1 lnc-TMEM30B-5:2
5.0 lnc-TMEM30B-5:2
5.1 HIF1A-AS2:4
5.2 HIF1A-AS2:6