Transcript: HLA-F-AS1:1

Basic information

LNCipedia transcript ID: HLA-F-AS1:1 
HGNC Gene Symbol: HLA-F-AS1    
HGNC Full Gene Name: HLA-F antisense RNA 1
Ensembl Gene ID: ENSG00000214922
Ensembl Transcript ID: ENST00000399247
RefSeq ID: NR_026972
Location (hg38): chr6:29726601-29749049
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1905 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000399247.2; HLA-F-AS1-002; OTTHUMT00000127902.2; NONHSAT108543; NR_026972; ENST00000399247.6; NR_026972.1
Alternative gene names: ENSG00000214922.3; HLA-F-AS1; OTTHUMG00000057541.2; ENSG00000214922.5; ENSG00000214922.9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4308 non-coding 
CPAT coding probability 13.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HLA-F-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP57-7:1
4.0 HLA-F-AS1:1
4.1 HLA-F-AS1:1
5.0 HLA-F-AS1:1
5.1 HLA-F-AS1:1
5.2 HLA-F-AS1:1