Transcript: HLA-F-AS1:5

Basic information

LNCipedia transcript ID: HLA-F-AS1:5 
LNCipedia gene ID: HLA-F-AS1
Location (hg38): chr6:29741731-29748969
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1157 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT108548
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8122 non-coding 
CPAT coding probability 65.16% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HLA-F-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP57-7:5
4.0 HLA-F-AS1:5
4.1 HLA-F-AS1:5
5.0 HLA-F-AS1:5
5.1 HLA-F-AS1:5
5.2 HLA-F-AS1:5