Transcript: HLX-AS1:1

Basic information

LNCipedia transcript ID: HLX-AS1:1 
HGNC Gene Symbol: HLX-AS1    
HGNC Full Gene Name: HLX antisense RNA 1
Ensembl Gene ID: ENSG00000257551
Ensembl Transcript ID: ENST00000552026
RefSeq ID: NR_046901
Location (hg38): chr1:220832763-220880140
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 563 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000552026.1; HLA-AS1-001; OTTHUMT00000406978.1; NONHSAT009623; NR_046901; NR_046901.1
Alternative gene names: ENSG00000257551.1; HLA-AS1; OTTHUMG00000170038.1; HLX-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 228.9569 coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HLX-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC096644.1-4:1
4.0 HLX-AS1:1
4.1 HLX-AS1:1
5.0 HLX-AS1:1
5.1 HLX-AS1:1
5.2 HLX-AS1:1