Transcript: HMBOX1-IT1:1

Basic information

LNCipedia transcript ID: HMBOX1-IT1:1 
HGNC Gene Symbol: HMBOX1-IT1    
HGNC Full Gene Name: HMBOX1 intronic transcript 1
Ensembl Gene ID: ENSG00000259196
Ensembl Transcript ID: ENST00000558292
Location (hg38): chr8:28949676-28955955
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 347 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558292.1; AC108449.2-001; OTTHUMT00000417035.1; NONHSAT125771
Alternative gene names: ENSG00000259196.1; AC108449.2; OTTHUMG00000132209.5; HMBOX1-IT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -215.1601 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HMBOX1-IT1:1 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXTL3-3:1
4.0 HMBOX1-IT1:1
4.1 HMBOX1-IT1:1
5.0 HMBOX1-IT1:1
5.1 HMBOX1-IT1:1
5.2 HMBOX1-IT1:1