Transcript: HMMR-AS1:2

Basic information

LNCipedia transcript ID: HMMR-AS1:2 
LNCipedia gene ID: HMMR-AS1
RefSeq ID: NR_109892
Location (hg38): chr5:163482604-163494058
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1269 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT104909; NR_109892; NR_109892.1
Alternative gene names: ; HMMR-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.9772 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HMMR-AS1:2 no no no no

Available literature

  1. Li (2018), Targeting Long Noncoding RNA HMMR-AS1 Suppresses and Radiosensitizes Glioblastoma., Neoplasia
  2. Liu (2016), HMMR antisense RNA 1, a novel long noncoding RNA, regulates the progression of basal-like breast cancer cells., Breast Cancer (Dove Med Press)


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUDCD2-1:3
4.0 HMMR-AS1:2
4.1 HMMR-AS1:2
5.0 HMMR-AS1:2
5.1 HMMR-AS1:2
5.2 HMMR-AS1:2