Transcript: HMMR-AS1:3

Basic information

LNCipedia transcript ID: HMMR-AS1:3 
HGNC Gene Symbol: HMMR-AS1    
HGNC Full Gene Name: HMMR antisense RNA 1
Ensembl Gene ID: ENSG00000251018
Ensembl Transcript ID: ENST00000521666
Location (hg38): chr5:163483065-163494034
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 800 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521666.1; RP11-80G7.1-001; OTTHUMT00000374168.1; NONHSAT104910
Alternative gene names: ENSG00000251018.2; RP11-80G7.1; OTTHUMG00000163557.1; HMMR-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.4397 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HMMR-AS1:3 no no no no

Available literature

  1. Li (2018), Targeting Long Noncoding RNA HMMR-AS1 Suppresses and Radiosensitizes Glioblastoma., Neoplasia
  2. Liu (2016), HMMR antisense RNA 1, a novel long noncoding RNA, regulates the progression of basal-like breast cancer cells., Breast Cancer (Dove Med Press)


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NUDCD2-1:2
4.0 HMMR-AS1:3
4.1 HMMR-AS1:3
5.0 HMMR-AS1:3
5.1 HMMR-AS1:3
5.2 HMMR-AS1:3