Transcript: HNF1A-AS1:1

Basic information

LNCipedia transcript ID: HNF1A-AS1:1 
LNCipedia gene ID: HNF1A-AS1
Location (hg38): chr12:120974385-120980965
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 536 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000535301.1; HNF1A-AS1-005; OTTHUMT00000402493.1; NONHSAT031261
Alternative gene names: ENSG00000241388.2; HNF1A-AS1; OTTHUMG00000169148.1; ENSG00000241388.3; ENSG00000241388.4; FLJ38690


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -208.2555 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF1A-AS1:1 no no no no

Available literature

  1. Fang (2017), Long non-coding RNA HNF1A-AS1 mediated repression of miR-34a/SIRT1/p53 feedback loop promotes the metastatic progression of colon cancer by functioning as a competing endogenous RNA., Cancer Lett.
  2. Dang (2015), Expression and clinical significance of long non-coding RNA HNF1A-AS1 in human gastric cancer., World J Surg Oncol
  3. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
  4. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  5. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  6. Wu (2015), The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma., Oncotarget
  7. Yang (2014), Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf43-1:1
4.0 HNF1A-AS1:1
4.1 HNF1A-AS1:1
5.0 HNF1A-AS1:1
5.1 HNF1A-AS1:1
5.2 HNF1A-AS1:1