Transcript: HNF4A-AS1:11

Basic information

LNCipedia transcript ID: HNF4A-AS1:11 
HGNC Gene Symbol: HNF4A-AS1    
HGNC Full Gene Name: HNF4A antisense RNA 1
Ensembl Gene ID: ENSG00000229005
Ensembl Transcript ID: ENST00000609152
Location (hg38): chr20:44372746-44384671
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 413 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609152.1
Alternative gene names: ENSG00000229005.2; HNF4A-AS1; uc002xlx


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.0352 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF4A-AS1:11 yes no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf62-3:10
4.0 HNF4A-AS1:11
4.1 HNF4A-AS1:11
5.0 HNF4A-AS1:11
5.1 HNF4A-AS1:11
5.2 HNF4A-AS1:11