Transcript: HNF4A-AS1:2

Basic information

LNCipedia transcript ID: HNF4A-AS1:2 
LNCipedia gene ID: HNF4A-AS1
Location (hg38): chr20:44372132-44395751
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1327 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT079871
Alternative gene names: uc002xlx


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.0352 non-coding 
CPAT coding probability 13.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF4A-AS1:2 yes no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf62-3:3
4.0 HNF4A-AS1:2
4.1 HNF4A-AS1:2
5.0 HNF4A-AS1:2
5.1 HNF4A-AS1:2
5.2 HNF4A-AS1:2