Transcript: HNF4A-AS1:6

Basic information

LNCipedia transcript ID: HNF4A-AS1:6 
LNCipedia gene ID: HNF4A-AS1
Location (hg38): chr20:44355626-44395626
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5470 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT079865
Alternative gene names: uc002xlx


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.7245 non-coding 
CPAT coding probability 16.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HNF4A-AS1:6 yes no no no

Available literature

  1. Nielsen (2014), Identification of expressed and conserved human noncoding RNAs., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf62-3:5
4.0 HNF4A-AS1:6
4.1 HNF4A-AS1:6
5.0 HNF4A-AS1:6
5.1 HNF4A-AS1:6
5.2 HNF4A-AS1:6