Transcript: HOMER3-AS1:9

Basic information

LNCipedia transcript ID: HOMER3-AS1:9 
HGNC Gene Symbol: HOMER3-AS1    
HGNC Full Gene Name: HOMER3 antisense RNA 1
Ensembl Gene ID: ENSG00000269019
Ensembl Transcript ID: ENST00000601106
Location (hg38): chr19:18940322-18946831
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 957 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT063009; ENST00000601106.1
Alternative gene names: ENSG00000269019.1; AC005932.1; AC002985.2; HOMER3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.9468 non-coding 
CPAT coding probability 67.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HOMER3-AS1:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DDX49-2:1
4.0 lnc-DDX49-2:1
4.1 lnc-DDX49-2:1
5.0 lnc-DDX49-2:1
5.1 HOMER3-AS1:6
5.2 HOMER3-AS1:9