Transcript: HORMAD2-AS1:1

Basic information

LNCipedia transcript ID: HORMAD2-AS1:1 
LNCipedia gene ID: HORMAD2-AS1
Location (hg38): chr22:30035539-30080895
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1091 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT084754
Alternative gene names: MTMR3-AS1; NONHSAG033653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.3925 non-coding 
CPAT coding probability 36.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HORMAD2-AS1:1 no no no no

Available literature

  1. Mirza (2014), Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIF-2:5
4.0 HORMAD2-AS1:1
4.1 HORMAD2-AS1:1
5.0 HORMAD2-AS1:1
5.1 HORMAD2-AS1:1
5.2 HORMAD2-AS1:1