Transcript: HORMAD2-AS1:11

Basic information

LNCipedia transcript ID: HORMAD2-AS1:11 
LNCipedia gene ID: HORMAD2-AS1
Location (hg38): chr22:30032425-30080257
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 999 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227117.2|HBMT00000950506.1
Alternative gene names: MTMR3-AS1; NONHSAG033653


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -43.8041 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HORMAD2-AS1:11 no no no no

Available literature

  1. Mirza (2014), Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HORMAD2-AS1:11
5.0 HORMAD2-AS1:11
5.1 HORMAD2-AS1:11
5.2 HORMAD2-AS1:11