Transcript: HORMAD2-AS1:3

Basic information

LNCipedia transcript ID: HORMAD2-AS1:3 
HGNC Gene Symbol: HORMAD2-AS1    
HGNC Full Gene Name: HORMAD2 and MTMR3 antisense RNA 1
Ensembl Gene ID: ENSG00000227117
Ensembl Transcript ID: ENST00000453743
Location (hg38): chr22:30018632-30080480
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 580 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453743.2; CTA-85E5.10-001; OTTHUMT00000322092.2; NONHSAT084748; ENST00000453743.6
Alternative gene names: ENSG00000227117.2; CTA-85E5.10; OTTHUMG00000151289.2; ENSG00000227117.6; HORMAD2-AS1; MTMR3-AS1; NONHSAG033653

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.0028 non-coding 
CPAT coding probability 36.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HORMAD2-AS1:3 no no no no

Available literature

  1. Mirza (2014), Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci., PLoS ONE

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LIF-2:1
4.0 HORMAD2-AS1:3
4.1 HORMAD2-AS1:3
5.0 HORMAD2-AS1:3
5.1 HORMAD2-AS1:3
5.2 HORMAD2-AS1:3