Transcript: HORMAD2-AS1:8

Basic information

LNCipedia transcript ID: HORMAD2-AS1:8 
LNCipedia gene ID: HORMAD2-AS1
Ensembl Gene ID: ENSG00000279159
Ensembl Transcript ID: ENST00000624945
Location (hg38): chr22:29978950-30028236
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 49287 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624945.1
Alternative gene names: ENSG00000279159.1; RP3-394A18.1; MTMR3-AS1; NONHSAG033653; AC003681.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 396.6253 coding 
CPAT coding probability 8.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HORMAD2-AS1:8 yes no no no

Available literature

  1. Mirza (2014), Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 HORMAD2-AS1:8
4.1 HORMAD2-AS1:8
5.0 HORMAD2-AS1:8
5.1 HORMAD2-AS1:8
5.2 HORMAD2-AS1:8