Transcript: HOXA-AS2:13

Basic information

LNCipedia transcript ID: HOXA-AS2:13 
HGNC Gene Symbol: HOXA-AS2    
HGNC Full Gene Name: HOXA cluster antisense RNA 2
Ensembl Gene ID: ENSG00000253552
Ensembl Transcript ID: ENST00000524048
Location (hg38): chr7:27123168-27124267
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 493 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524048; ENST00000524048.1; HOXA-AS2-007; OTTHUMT00000407130.1; NONHSAT119680
Alternative gene names: ENSG00000253552; AC004080.12; ENSG00000253552.2; HOXA-AS2; OTTHUMG00000063274.3; ENSG00000253552.3; ENSG00000253552.7; HOXA3as


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -171.546 non-coding 
CPAT coding probability 15.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXA-AS2:13 yes no no no

Available literature

  1. Xie (2015), Long noncoding RNA HOXA-AS2 promotes gastric cancer proliferation by epigenetically silencing P21/PLK3/DDIT3 expression., Oncotarget
  2. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget
  3. Zhao (2013), HOX antisense lincRNA HOXA-AS2 is an apoptosis repressor in all trans retinoic acid treated NB4 promyelocytic leukemia cells., J. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EVX1-9:10
3.1 lnc-EVX1-10:10
4.0 HOXA-AS2:13
4.1 HOXA-AS2:13
5.0 HOXA-AS2:13
5.1 HOXA-AS2:13
5.2 HOXA-AS2:13