Transcript: HOXA-AS2:6

Basic information

LNCipedia transcript ID: HOXA-AS2:6 
HGNC Gene Symbol: HOXA-AS2    
HGNC Full Gene Name: HOXA cluster antisense RNA 2
Ensembl Gene ID: ENSG00000253552
Ensembl Transcript ID: ENST00000593438
Location (hg38): chr7:27116036-27116664
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 629 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT119674; ENST00000593438.1
Alternative gene names: ENSG00000253552.3; HOXA-AS2; ENSG00000253552.7; HOXA3as


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.2299 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXA-AS2:6 yes no no no

Available literature

  1. Xie (2015), Long noncoding RNA HOXA-AS2 promotes gastric cancer proliferation by epigenetically silencing P21/PLK3/DDIT3 expression., Oncotarget
  2. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget
  3. Zhao (2013), HOX antisense lincRNA HOXA-AS2 is an apoptosis repressor in all trans retinoic acid treated NB4 promyelocytic leukemia cells., J. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EVX1-10:12
4.0 HOXA-AS2:6
4.1 HOXA-AS2:6
5.0 HOXA-AS2:6
5.1 HOXA-AS2:6
5.2 HOXA-AS2:6