Transcript: HOXA-AS2:9

Basic information

LNCipedia transcript ID: HOXA-AS2:9 
LNCipedia gene ID: HOXA-AS2
RefSeq ID: NR_122069
Location (hg38): chr7:27121919-27128760
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1048 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_122069; NR_122069.1
Alternative gene names: HOXA3as; HOXA-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -129.1533 non-coding 
CPAT coding probability 78.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HOXA-AS2:9 yes no no no

Available literature

  1. Xie (2015), Long noncoding RNA HOXA-AS2 promotes gastric cancer proliferation by epigenetically silencing P21/PLK3/DDIT3 expression., Oncotarget
  2. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget
  3. Zhao (2013), HOX antisense lincRNA HOXA-AS2 is an apoptosis repressor in all trans retinoic acid treated NB4 promyelocytic leukemia cells., J. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EVX1-10:13
4.0 HOXA-AS2:9
4.1 HOXA-AS2:9
5.0 HOXA-AS2:9
5.1 HOXA-AS2:9
5.2 HOXA-AS2:9