Transcript: HOXA-AS3:10

Basic information

LNCipedia transcript ID: HOXA-AS3:10 
LNCipedia gene ID: HOXA-AS3
Location (hg38): chr7:27140468-27152697
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 583 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254369.2|ENST00000521197.1
Alternative gene names: HOXA6as


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.6887 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXA-AS3:10 yes no no no

Available literature

  1. Wu (2017), Upregulation of long noncoding RNA HOXA-AS3 promotes tumor progression and predicts poor prognosis in glioma., Oncotarget
  2. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  3. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HOXA-AS3:10
5.0 HOXA-AS3:10
5.1 HOXA-AS3:10
5.2 HOXA-AS3:10