Transcript: HOXA-AS3:2

Basic information

LNCipedia transcript ID: HOXA-AS3:2 
HGNC Gene Symbol: HOXA-AS3    
HGNC Full Gene Name: HOXA cluster antisense RNA 3
Ensembl Gene ID: ENSG00000254369
Ensembl Transcript ID: ENST00000521197
Location (hg38): chr7:27140364-27152697
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 687 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521197; ENST00000521197.1; HOXA-AS3-004; OTTHUMT00000350161.1; ENST00000521197.5
Alternative gene names: ENSG00000254369; RP1-170O19.2; ENSG00000254369.2; HOXA-AS3; OTTHUMG00000158092.3; ENSG00000254369.6; HOXA6as


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6887 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXA-AS3:2 yes no no no

Available literature

  1. Wu (2017), Upregulation of long noncoding RNA HOXA-AS3 promotes tumor progression and predicts poor prognosis in glioma., Oncotarget
  2. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  3. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EVX1-7:2
3.1 lnc-EVX1-8:2
4.0 HOXA-AS3:2
4.1 HOXA-AS3:2
5.0 HOXA-AS3:2
5.1 HOXA-AS3:2
5.2 HOXA-AS3:2