Transcript: HOXA-AS3:7

Basic information

LNCipedia transcript ID: HOXA-AS3:7 
HGNC Gene Symbol: HOXA-AS3    
HGNC Full Gene Name: HOXA cluster antisense RNA 3
Ensembl Gene ID: ENSG00000254369
Ensembl Transcript ID: ENST00000524304
Location (hg38): chr7:27150052-27152726
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2063 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524304; ENST00000524304.1; HOXA-AS3-002; OTTHUMT00000350163.1; NONHSAT119688
Alternative gene names: ENSG00000254369; RP1-170O19.2; ENSG00000254369.2; HOXA-AS3; OTTHUMG00000158092.3; ENSG00000254369.6; HOXA6as


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6887 non-coding 
CPAT coding probability 4.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXA-AS3:7 yes no no no

Available literature

  1. Wu (2017), Upregulation of long noncoding RNA HOXA-AS3 promotes tumor progression and predicts poor prognosis in glioma., Oncotarget
  2. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  3. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EVX1-7:5
3.1 lnc-EVX1-8:5
4.0 HOXA-AS3:7
4.1 HOXA-AS3:7
5.0 HOXA-AS3:7
5.1 HOXA-AS3:7
5.2 HOXA-AS3:7