Transcript: HOXA10-AS:4

Basic information

LNCipedia transcript ID: HOXA10-AS:4 
HGNC Gene Symbol: HOXA10-AS    
HGNC Full Gene Name: HOXA10 antisense RNA
Ensembl Gene ID: ENSG00000253187
Ensembl Transcript ID: ENST00000519694
Location (hg38): chr7:27168619-27171373
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 441 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519694.1; HOXA-AS4-002; OTTHUMT00000350395.1; NONHSAT119696
Alternative gene names: ENSG00000253187.2; HOXA-AS4; OTTHUMG00000158203.3; HOXA10-AS;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -193.9932 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXA10-AS:4 no no no no

Available literature

  1. Richards (2015), A functional variant in HOXA11-AS, a novel long non-coding RNA, inhibits the oncogenic phenotype of epithelial ovarian cancer., Oncotarget
  2. Jalali (2013), Systematic transcriptome wide analysis of lncRNA-miRNA interactions., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EVX1-7:1
4.0 HOXA10-AS:4
4.1 HOXA10-AS:4
5.0 HOXA10-AS:4
5.1 HOXA10-AS:4
5.2 HOXA10-AS:4