Transcript: HOXB-AS3:23

Basic information

LNCipedia transcript ID: HOXB-AS3:23 
LNCipedia gene ID: HOXB-AS3
RefSeq ID: NR_033202
Location (hg38): chr17:48590420-48602341
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 536 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033202; NR_033202.2
Alternative gene names: HOXB-AS3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.8574 non-coding 
CPAT coding probability 5.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXB-AS3:23 no no no no

Available literature

  1. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  2. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med
  3. Han (2014), Screening of lymph nodes metastasis associated lncRNAs in colorectal cancer patients., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCOCO2-8:8
4.0 lnc-CALCOCO2-8:8
4.1 lnc-CALCOCO2-8:8
5.0 lnc-CALCOCO2-8:8
5.1 HOXB-AS3:4
5.2 HOXB-AS3:23