Transcript: HOXB-AS3:27

Basic information

LNCipedia transcript ID: HOXB-AS3:27 
HGNC Gene Symbol: HOXB-AS3    
HGNC Full Gene Name: HOXB cluster antisense RNA 3
Ensembl Gene ID: ENSG00000233101
Ensembl Transcript ID: ENST00000474040
Location (hg38): chr17:48590442-48601921
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 741 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT054432; ENST00000474040.1; ENST00000474040.5
Alternative gene names: ENSG00000233101.6; HOXB-AS3; ENSG00000233101.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.8574 non-coding 
CPAT coding probability 4.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXB-AS3:27 no no no no

Available literature

  1. Ragusa (2015), Non-coding landscapes of colorectal cancer., World J. Gastroenterol.
  2. Yang (2015), Expression profile of long non-coding RNAs is altered in endometrial cancer., Int J Clin Exp Med
  3. Han (2014), Screening of lymph nodes metastasis associated lncRNAs in colorectal cancer patients., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCOCO2-8:11
4.0 lnc-CALCOCO2-8:11
4.1 lnc-CALCOCO2-8:11
5.0 lnc-CALCOCO2-8:11
5.1 HOXB-AS3:8
5.2 HOXB-AS3:27