Transcript: HOXB-AS4:2

Basic information

LNCipedia transcript ID: HOXB-AS4:2 
HGNC Gene Symbol: HOXB-AS4    
HGNC Full Gene Name: HOXB cluster antisense RNA 4
Ensembl Gene ID: ENSG00000242207
Ensembl Transcript ID: ENST00000462131
Location (hg38): chr17:48629549-48634661
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 214 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000462131.1; HOXB-AS4-001; OTTHUMT00000358089.1; NONHSAT054458
Alternative gene names: ENSG00000242207.1; HOXB-AS4; OTTHUMG00000159902.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXB-AS4:2 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CALCOCO2-5:2
4.0 HOXB-AS4:2
4.1 HOXB-AS4:2
5.0 HOXB-AS4:2
5.1 HOXB-AS4:2
5.2 HOXB-AS4:2