Transcript: HOXC-AS1:2

Basic information

LNCipedia transcript ID: HOXC-AS1:2 
HGNC Gene Symbol: HOXC-AS1    
HGNC Full Gene Name: HOXC cluster antisense RNA 1
Ensembl Gene ID: ENSG00000250451
Ensembl Transcript ID: ENST00000512427
Location (hg38): chr12:53999022-53999620
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 290 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512427.1; HOXC-AS1-002; OTTHUMT00000358935.1; NONHSAT028531; ENST00000512427.5
Alternative gene names: ENSG00000250451.1; HOXC-AS1; OTTHUMG00000160024.1; ENSG00000250451.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXC-AS1:2 no no no no

Available literature

  1. Huang (2016), Long Noncoding RNA HOXC-AS1 Suppresses Ox-LDL-Induced Cholesterol Accumulation Through Promoting HOXC6 Expression in THP-1 Macrophages., DNA Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMUG1-4:2
4.0 HOXC-AS1:2
4.1 HOXC-AS1:2
5.0 HOXC-AS1:2
5.1 HOXC-AS1:2
5.2 HOXC-AS1:2