Transcript: HOXC-AS2:3

Basic information

LNCipedia transcript ID: HOXC-AS2:3 
HGNC Gene Symbol: HOXC-AS2    
HGNC Full Gene Name: HOXC cluster antisense RNA 2
Ensembl Gene ID: ENSG00000250133
Ensembl Transcript ID: ENST00000604081
Location (hg38): chr12:53993810-53995899
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2090 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT028527; ENST00000604081.1
Alternative gene names: ENSG00000250133.2; HOXC-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.9153 non-coding 
CPAT coding probability 77.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HOXC-AS2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMUG1-5:3
4.0 HOXC-AS2:3
4.1 HOXC-AS2:3
5.0 HOXC-AS2:3
5.1 HOXC-AS2:3
5.2 HOXC-AS2:3