Transcript: HOXC-AS2:4

Basic information

LNCipedia transcript ID: HOXC-AS2:4 
LNCipedia gene ID: HOXC-AS2
Location (hg38): chr12:53993810-53995921
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2112 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000250133.2|ENST00000604081.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.9153 non-coding 
CPAT coding probability 62.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HOXC-AS2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HOXC-AS2:4
5.0 HOXC-AS2:4
5.1 HOXC-AS2:4
5.2 HOXC-AS2:4