Transcript: HOXC-AS3:3

Basic information

LNCipedia transcript ID: HOXC-AS3:3 
HGNC Gene Symbol: HOXC-AS3    
HGNC Full Gene Name: HOXC cluster antisense RNA 3
Ensembl Gene ID: ENSG00000251151
Ensembl Transcript ID: ENST00000513165
Location (hg38): chr12:53983671-53984758
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 533 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000513165.1; HOXC-AS3-003; OTTHUMT00000358938.1; NONHSAT028518
Alternative gene names: ENSG00000251151.2; HOXC-AS3; OTTHUMG00000160025.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -333.1367 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXC-AS3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SMUG1-6:3
4.0 HOXC-AS3:3
4.1 HOXC-AS3:3
5.0 HOXC-AS3:3
5.1 HOXC-AS3:3
5.2 HOXC-AS3:3