Transcript: HOXC-AS3:7

Basic information

LNCipedia transcript ID: HOXC-AS3:7 
LNCipedia gene ID: HOXC-AS3
Location (hg38): chr12:53979604-53985586
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5036 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000251151.2|MICT00000079567.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.5055 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HOXC-AS3:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HOXC-AS3:7
5.0 HOXC-AS3:7
5.1 HOXC-AS3:7
5.2 HOXC-AS3:7