Transcript: HPN-AS1:2

Basic information

LNCipedia transcript ID: HPN-AS1:2 
LNCipedia gene ID: HPN-AS1
RefSeq ID: NR_024561
Location (hg38): chr19:35072801-35106271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3681 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT065797; NR_024561; NR_024561.1
Alternative gene names: ; HPN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.2051 non-coding 
CPAT coding probability 21.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HPN-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC020907.3-1:2
4.0 HPN-AS1:2
4.1 HPN-AS1:2
5.0 HPN-AS1:2
5.1 HPN-AS1:2
5.2 HPN-AS1:2