Transcript: HTR2A-AS1:2

Basic information

LNCipedia transcript ID: HTR2A-AS1:2 
LNCipedia gene ID: HTR2A-AS1
RefSeq ID: NR_046612
Location (hg38): chr13:46852140-46856299
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 441 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT033669; NR_046612; NR_046612.1
Alternative gene names: ; HTR2A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -444.7448 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HTR2A-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRCH1-4:5
4.0 HTR2A-AS1:2
4.1 HTR2A-AS1:2
5.0 HTR2A-AS1:2
5.1 HTR2A-AS1:2
5.2 HTR2A-AS1:2