Transcript: HTR2A-AS1:4

Basic information

LNCipedia transcript ID: HTR2A-AS1:4 
LNCipedia gene ID: HTR2A-AS1
Location (hg38): chr13:46852152-46856299
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 428 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000430913.1; HTR2A-AS1-001; OTTHUMT00000044832.1; NONHSAT033670
Alternative gene names: ENSG00000224517.1; HTR2A-AS1; OTTHUMG00000016880.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -512.8329 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HTR2A-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRCH1-4:2
4.0 HTR2A-AS1:4
4.1 HTR2A-AS1:4
5.0 HTR2A-AS1:4
5.1 HTR2A-AS1:4
5.2 HTR2A-AS1:4