Transcript: HTT-AS:3

Basic information

LNCipedia transcript ID: HTT-AS:3 
LNCipedia gene ID: HTT-AS
Location (hg38): chr4:3048600-3074518
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2528 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000251075.1|MICT00000259796.1
Alternative gene names: HTTAS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.7485 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HTT-AS:3 no no no no

Available literature

  1. Wu (2013), Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases., Brain Res. Bull.
  2. Chung (2011), A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 HTT-AS:3
5.0 HTT-AS:3
5.1 HTT-AS:3
5.2 HTT-AS:3