Transcript: HTT-AS:5

Basic information

LNCipedia transcript ID: HTT-AS:5 
LNCipedia gene ID: HTT-AS
Location (hg38): chr4:3049554-3062614
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 326 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008412; NONHSAT094842
Alternative gene names: XLOC_003857; linc-NOP14-1; HTTAS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.9816 non-coding 
CPAT coding probability 5.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HTT-AS:5 no no no no

Available literature

  1. Wu (2013), Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases., Brain Res. Bull.
  2. Chung (2011), A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NOP14-1:1
3.1 lnc-NOP14-1:1
4.0 lnc-NOP14-1:1
4.1 HTT-AS:5
5.0 HTT-AS:5
5.1 HTT-AS:5
5.2 HTT-AS:5