Transcript: IDH1-AS1:3

Basic information

LNCipedia transcript ID: IDH1-AS1:3 
HGNC Gene Symbol: IDH1-AS1    
HGNC Full Gene Name: IDH1 antisense RNA 1
Ensembl Gene ID: ENSG00000231908
Ensembl Transcript ID: ENST00000448588
Location (hg38): chr2:208255400-208256168
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 489 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448588.1; IDH1-AS1-002; OTTHUMT00000336680.1; NONHSAT076637
Alternative gene names: ENSG00000231908.1; IDH1-AS1; OTTHUMG00000154707.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.7932 non-coding 
CPAT coding probability 1.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IDH1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIKFYVE-1:2
4.0 IDH1-AS1:3
4.1 IDH1-AS1:3
5.0 IDH1-AS1:3
5.1 IDH1-AS1:3
5.2 IDH1-AS1:3