Transcript: IFNG-AS1:1

Basic information

LNCipedia transcript ID: IFNG-AS1:1 
LNCipedia gene ID: IFNG-AS1
Location (hg38): chr12:67989382-67996873
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1131 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT029276; FPKM1_group_6441_transcript_1
Alternative gene names: Tmevpg1; LincR-Ifng-3'AS; NEST


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.5146 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IFNG-AS1:1 no no no no

Available literature

  1. Peng (2015), The Long Noncoding RNA IFNG-AS1 Promotes T Helper Type 1 Cells Response in Patients with Hashimoto's Thyroiditis., Sci Rep
  2. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun
  3. Collier (2014), Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet., J. Immunol.
  4. Hu (2013), Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation., Nat. Immunol.
  5. Vigneau (2001), Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DYRK2-4:4
4.0 IFNG-AS1:1
4.1 IFNG-AS1:1
5.0 IFNG-AS1:1
5.1 IFNG-AS1:1
5.2 IFNG-AS1:1