Transcript: IFNG-AS1:2

Basic information

LNCipedia transcript ID: IFNG-AS1:2 
HGNC Gene Symbol: IFNG-AS1    
HGNC Full Gene Name: IFNG antisense RNA 1
Ensembl Gene ID: ENSG00000255733
Ensembl Transcript ID: ENST00000538665
RefSeq ID: NR_104125
Location (hg38): chr12:67989445-68021327
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1791 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000538665; ENST00000538665.1; IFNG-AS1-001; OTTHUMT00000402294.1; NONHSAT029277; NR_104125; ENST00000538665.5; NR_104125.1
Alternative gene names: ENSG00000255733; GS1-410F4.2; ENSG00000255733.1; IFNG-AS1; OTTHUMG00000169108.1; ENSG00000255733.5; Tmevpg1; LincR-Ifng-3'AS; NEST


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.6663 non-coding 
CPAT coding probability 6.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IFNG-AS1:2 no no no no

Available literature

  1. Peng (2015), The Long Noncoding RNA IFNG-AS1 Promotes T Helper Type 1 Cells Response in Patients with Hashimoto's Thyroiditis., Sci Rep
  2. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun
  3. Collier (2014), Regulation of the Th1 genomic locus from Ifng through Tmevpg1 by T-bet., J. Immunol.
  4. Hu (2013), Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation., Nat. Immunol.
  5. Vigneau (2001), Homology between a 173-kb region from mouse chromosome 10, telomeric to the Ifng locus, and human chromosome 12q15., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DYRK2-4:1
3.1 lnc-DYRK2-4:1
4.0 IFNG-AS1:2
4.1 IFNG-AS1:2
5.0 IFNG-AS1:2
5.1 IFNG-AS1:2
5.2 IFNG-AS1:2