Transcript: IL1R1-AS1:3

Basic information

LNCipedia transcript ID: IL1R1-AS1:3 
HGNC Gene Symbol: IL1R1-AS1    
HGNC Full Gene Name: IL1R1 antisense RNA 1
Ensembl Gene ID: ENSG00000226925
Ensembl Transcript ID: ENST00000428188
Location (hg38): chr2:102172621-102182108
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 382 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428188.1; AC007271.3-001; OTTHUMT00000331186.1; NONHSAT072848
Alternative gene names: ENSG00000226925.1; AC007271.3; OTTHUMG00000153435.1; AC007271.1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.8295 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
IL1R1-AS1:3 no no no no

Available literature

  1. Shao (2018), SCCA, TSGF, and the Long Non-Coding RNA AC007271.3 are Effective Biomarkers for Diagnosing Oral Squamous Cell Carcinoma., Cell. Physiol. Biochem.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MFSD9-4:1
4.0 lnc-MFSD9-4:1
4.1 lnc-MFSD9-4:1
5.0 lnc-MFSD9-4:1
5.1 IL1R1-AS1:2
5.2 IL1R1-AS1:3